PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC301_p9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 216aa    MW: 24048.5 Da    PI: 10.1602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC301_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08127167954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  RrC301_p9 127 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 167
                699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-6141172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDSDIMNMMM QQIEKLPEFC NTNSSLIDHN NNNTYPFLFN SNHNNSEMTH EPGNGSGLLT  60
NPSSLRPNTT YSPVLYDKRN NNTNMAAMRE MIFRIAVMQP VHIDPEAVKP PKRRNVRISK  120
DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQTLEHQTVA  180
SGGGMTAAVS GGGGVVMKGC GAMGTHQMVG NAQLLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651704.11e-119PREDICTED: transcription factor HEC1-like
SwissprotQ9FHA71e-95HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A078EPJ71e-119A0A078EPJ7_BRANA; BnaA07g12160D protein
STRINGBra012128.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-87bHLH family protein